Modrák et al., 2021

Disease progression of 213 patients hospitalized with COVID-19 in the Czech Republic in March-October 2020: An exploratory analysis

COVID-19
Trajectory
Hidden Markov Models
Author

Simon Steiger

Published

June 10, 2024

At a glance
Objective
To explore associations between COVID-19 treatments and patient outcomes.
Related articles
Currently none. This article may be related to other articles modeling disease trajectories over time.
DOI
DOI: https://doi.org/10.1371/journal.pone.0245103

Background

  • Lack of knowledge about effective treatments for COVID-19
  • Existing methods for predicting COVID-19 severity are at high risk of bias

Methods

  • Convenience sample from 10 sites
  • Data were available on daily resolution
  • Multiverse analysis, which reports and compare different models to capture uncertainty about different models and its impact on the conclusions
  • Among the models run is a Bayesian HMM using rates, restricted transitions, and terminal states implemented in brms with some added special sauce (for more detail, see the GitHub repo and a post on the Stan discourse)

Results

  • Mostly inconclusive results
  • Adjusted models suggest that effect of some candidate treatments is spurious

Conclusion

  • Other studies on the analyzed treatments likely overestimated their effectiveness